🔮 scOracle: An AI Assistant for Single-Cell Analysis
Published:
scOracle is a Retrieval-Augmented Generation (RAG) chatbot assistant that helps users explore, understand, and troubleshoot single-cell RNA-seq analysis by leveraging real package documentation and source code. Powered by an Large Lanuguage Model (LLM) and augmented with contextual knowledge from tools like Scanpy and Seurat, scOracle aims to deliver accurate and domain-specific insights directly from the ecosystem that bioinformaticians rely on.
Available at scoracle-syc.streamlit.app
Implementation details
- Part 1: Foundations
- Part 2: Data Ingestion & Indexing
- Part 3: CLI Query Engine
- Part 4: Streamlit UI
- Part 5: Scaling Up & Cloud Hosting
