Projects

Replicating single-cell RNA-seq and ATAC-seq analyses from a 2024 aging heart study, translated from R (Seurat/Signac) to Python using the scverse ecosystem (Scanpy, muon).

An interactive web application for performing enrichment analyses on gene sets specifically relevant to macrophages.

A lightweight Nextflow pipeline for processing scRNA-seq data via simpleaf and the alevin-fry ecosystem. Takes FASTQ files and produces a cell × gene expression matrix and QC report.

A RAG-powered chatbot for single-cell analysis, grounded in real package documentation from Scanpy and Seurat to deliver accurate, domain-specific insights.