When doing bioinformatics analysis using a Python workstack, it is quite common that crucial software packages are implemented only in R.
Posts tagged: bioinformatics
In this post, I will push scOracle to the cloud, making it fully accesible via a browser-based interface.
In this post, I will transform the comand-line version of scOracle into a fully interactive chatbot by creating a clean, browser-based interface using Streamlit.
In this part, we will connect the knowledge base we built in part 2 with an OpenAI LLM, transforming scOracle into a functional AI-powered chatbot for single-cell analysis!
For a minimum viable product (MVP), I limited document ingestion to Scanpy, a leading Python-based framework for analyzing scRNA-seq data.
AI applications like ChatGPT have acted as capable personal assistants during my single-cell analysis projects, whether helping me debug a Scanpy error at midnight or brainstorming strategies for integrating scRNA and...
Background I was analyzing a scRNA-seq dataset that requires merging multiple adata objects. Normally, this would involve a simple call of anndata.concat.
I used the Python package GEOparse to access and download data from GSE277702. This was part of my effort to replicate analyses from a manuscript on aging in the heart.